Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000054 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000054 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49644
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (74.39%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

49644

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (74.39%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023453	Metagenome / Metatranscriptome	210	Y
F025145	Metagenome / Metatranscriptome	203	Y
F038861	Metagenome / Metatranscriptome	165	N
F076507	Metagenome / Metatranscriptome	118	Y
F099871	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100005428	F076507	AGGAG	MSLILSIEEAKEKGMWKLVEQLERDLERRQLLKMAPLEEVKDKHESTMWQDNIDDDWED
Ga0208667_100005466	F099871	GGAG	MGHFIKFTFTAFDKDFSVHVDDKDISTPVKMLNEKSRAMGKANREFLDKFLDDGIDPFPGWWTESSPTDFYWSTGNNFD
Ga0208667_100005470	F038861	N/A	MNKWTKYKTSHEGVGTFVSVWLDEDNGLVKRTFDGDHCGEGISKRTSKADILFKNEVYWLTFPELYRSKFLPELIDIDEESKTIIQRYYGPNLLDYYPDKFPISNLSEQILEMYRFFHEVGVNKLNGALSNMSLNGDQVIAFDFKWARPAPKANAKEVKAFRKWLTKLDPDLVEELVKIKSSSVVSDKV
Ga0208667_100005473	F023453	N/A	MRIGEITKSETLYELEKWAKRNIPLLEDGSMDAERLSQTLLQKAVNKFKKQPEPTEERTKDMEDYMSKLEDKLGNDEKVKTPIIKKFFGFFRAHPRMIGLGVMILMLLSPMLPSIAVVGLSLEKILSMILAGLYAMDIASPGVKTSIEL
Ga0208667_100005475	F025145	N/A	MYLSYYLTFDTDLWYNCLTMKIKHKPQFNIEKVTAHYTKKDGVPVHYVCTSDLDESDRPFDIYYRDTPHPEHNNFYFGLYADDEDRMMICKADSIEKYQFGMISDQDEWVYSRSHHDLVETDSGNIDGGRKYIKRGGDLDNQKHVVAKIVDGEFVTGEKNV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000054

Overview

Ecosystem & Geography

Associated Families

Sequences