Scaffold Ga0208667_1000052

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000052
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50150
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (85.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020895	Metagenome / Metatranscriptome	221	N
F030416	Metagenome / Metatranscriptome	185	N
F056522	Metagenome / Metatranscriptome	137	N
F065209	Metagenome / Metatranscriptome	128	N
F097361	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100005225	F030416	N/A	MRYKVPNTKASVEQSQLDAAMAQFCELADDMNRPTLDTLIANTLTPKELKKREPTLIYDSGWKDAS
Ga0208667_100005233	F097361	AGTAGG	MLYLLFTPFAGYFAMLITIVIMHSVGYDVRGVDTFTIWCVYIQIYVYLFVITKLKGKTDE
Ga0208667_100005236	F020895	AGG	MIVHGITMPSIKAYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPDKEVEFVSCAEYEADEYADIGYVYDAPVVLQ
Ga0208667_100005237	F056522	AGGAG	MAAKIKLTKTMLDKSIIDANKTVQTFLLEDFGMDYTDKFFTETIFNAEKDKWERNKFTVTGEYIDGTEAVITFYRSGKRGDRRISIQKLRQYADAGNEVRLISDSESDGDGTRIFISVYTSGSETDAA
Ga0208667_100005248	F065209	GAGG	MIRPMTQEERERATERSLSNMTTSKSICEIRLHNAMIRNNLTLEECINAIDTYAEDKKFHEHLDSLYNVEQDTWDDWHDGDIK