Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000035 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000035 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56000
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (88.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

56000

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (88.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012413	Metagenome / Metatranscriptome	281	Y
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F067202	Metagenome	126	Y
F087896	Metagenome / Metatranscriptome	110	N
F090997	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100003525	F090997	AGGAG	MRIRVKAEETVYKEYFVDVPKHILDVSNFLLSKTYLKNAIHNWVDENESEFDYQDYDSVKEWYAWEEVQHND
Ga0208667_100003528	F067202	AGGAG	MQYKDIVIAAEDLECHTIDTVAEAIREHILDLDLASSKTLTGFTWRIDVRMRTDNES
Ga0208667_100003529	F028349	GAGG	MKVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEVGDVGYFKPRLGTDEWIYDWIYKKEITDEDLMKALGR
Ga0208667_100003531	F020815	AGGA	MRLYMNKQGDWVGTQAEAKKISASMVDVPTDKPNLLKWLNTFTGAIDDAAKEVIDSKPKTRTVTQKAHAWDTIMQCAKNASINDLTMALIVYMDRVQDIADKQKETQQ
Ga0208667_100003533	F087896	AGGAG	MNYKTSQGVELSDDGYTKVTVKESLGYGWEATLYNNDRLVLTQDATGETLSIPPESTQTLRDIFKSINEET
Ga0208667_100003537	F012529	AGGAGG	MLEDKTYKVKVGEWNDAVIYVYERHHKCLNPDDKPEDHRYKHWKEVVTVIPVSHELDDYQDTSGMFHNNVRATVDALAELYSSSPDYEMGVEYVMNTHQYINV
Ga0208667_100003539	F032993	GGAG	MQTNKYTESLPNMEEPQLPVSMLQHMEQMGLLPVSHDDDGVNNIDLPWRSNTNFFRRDVLDEKGEPLF
Ga0208667_10000357	F012413	AGG	MSLKAFVNNKAQWDAFCEELDILILEQQRRLEQSEVAIDLHRCQGSISTLRRLKYLRDKVNGSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000035

Overview

Ecosystem & Geography

Associated Families

Sequences