Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000019 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000019 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65684
Total Scaffold Genes	100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	81 (81.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

65684

Total Scaffold Genes

100 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

81 (81.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002688	Metagenome / Metatranscriptome	536	Y
F005298	Metagenome / Metatranscriptome	405	Y
F021205	Metagenome	220	Y
F065746	Metagenome / Metatranscriptome	127	N
F091853	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100001931	F091853	AGAAG	METNQLRFFLSQCEYKWNHARMEMEDIWVRRELGDELFLQCNQPGFDLVYVRSDSQILPGATYCRCDIYVDVEDSKQATLFALKYNKALLVKRGQRDNEYW
Ga0208667_100001951	F002688	GGTGG	MSNPNEPYHNKGVGIAFFIIAFMMLGVPIIIGTSMGWFNLFGILGL
Ga0208667_100001958	F021205	AGG	MELNEKQIEAQVERWDTFARIVPTIFLVVAGILVATGVINFEQAFYVGLGLFAVTAVTWWFWTIYTIRQLVKTLNRASKNLSEVRSEFKAVSREVQELRNEQ
Ga0208667_100001959	F005298	AGGA	MNSNRKFILKKAILNLISGLSMVTIISLGIMYMSFDNAFVFTDTEISVTNNPVTADQDIEFYMVGSKRYECNSTAAYGVAYATDGSHSHQLNTFTKRYVQNTAPGERVENGWHMKVPDDMVHGGEYRVSMTGEFTCVHLIFKTHKKQEFDNIYLKVDPR
Ga0208667_100001983	F065746	AGGAG	MKEPYVSLFNYVDNWKKSIVNGYADSIQSAYGEDLSIFFGPKEERTPIKFLEPEDYQRKLQLIKRANLPKLNVSKGALNLESMGTVDFVTAFKMALDALNAVVDPETGKPVLYGVQLQSYNLDEAVMNGLAVDQSLVAMNMKAQRVIYLWRMFEIAMNFDSSLVFGAKGRYAADEERVFLNDGMQGSMALALHGVKTLIVGFSMKDMPYIDFNQFLACNADVVPITDYDFVKVRNNRARAMLQAGLDVKLEDQPAYNLMRVFDNVNITPVPESATPGAGETKHTAHMQKHFKEFCKDNYSNRFAFEMALKCVRNAWHFSAIDHAPVWGLTELFTQMPKKSVTDDLLIKIGQVMSERWSSSSKVWSDVLKGIRSQYPEKTKSGKYTEWKDHRFTSGSNRGLMIAAAIKSLIDNREQHIQAQPGKQKGYDLVIPTVVKGGSDFTIDVPYVYTDTNGNVAEYSTLIDVDAFNNKAQKQEDDKFAEFM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences