Scaffold Ga0208667_1000005

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000005
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110476
• Total Scaffold Genes: 166
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (43.98%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004489	Metagenome / Metatranscriptome	436	Y
F017142	Metagenome / Metatranscriptome	242	Y
F022115	Metagenome / Metatranscriptome	216	Y
F077491	Metagenome / Metatranscriptome	117	N
F078746	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_1000005119	F004489	N/A	MANPIGCIEAINNVRTSVQGNDPRGWMKACAIETLLKGKSGKHFKNCLIHKMESTAQHIEDPVGYADELYNEIKGKCS
Ga0208667_1000005129	F078746	N/A	MVNKKNIIDLHGVRHGDVEEVLENNLLGYHDTEGWEIITGNSTYMIEIVEEFLRLNLFKFYRTSDNYGRIILAH
Ga0208667_1000005153	F022115	N/A	MSEKIYVRKVETWTISSASEPIEVNVEALRKCEPPYEGDSDQELVNYLQNNVFMEYEFYENETNIEAYGEDAVFDLVMEEAYVDNEFFDSRNKGEESSLQIGIPDEEWSKYGGFQPLANGEYEY
Ga0208667_100000519	F077491	N/A	MKVKEIKYGIEITKPWNAEMYNHNEKVSDLMKAELRLALNNAMKTENEELLRDVASVICPSGYGIGFEMEDIYNESLRELGMVENYWLNEEYPYGVTKGIVPSVELEFIGY
Ga0208667_100000520	F017142	N/A	MTYQELNQLSIEQLRVLNNKVVEVIKIKKSENALNVKEELYIGANVSVNHPKLKGKQLRVEKINRTKAVLKVLNGYGTYTVPMNMIEVNK