NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1036365

Scaffold Ga0207887_1036365


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1036365 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034348Metagenome / Metatranscriptome175Y
F068939Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10363652F068939GGAGGMKQYEKYGDTALSIITYPIRLCIGVYNAVERHMPSTVECNYEIKKKGYDIVRKKEGKNGTKTHN
Ga0207887_10363653F034348AGGAGGMEPKHITKAPTGQRVTEKVMPLTKWFAEQYFQTVELMHSDPRFKNLPNYNQTSCIATVMIATNGALDSDRAKKRAERLIEISKKEDQVKTA

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