NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1026858

Scaffold Ga0207887_1026858


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1026858 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012032Metagenome / Metatranscriptome284Y
F012880Metagenome276Y
F016013Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10268581F016013GGAGMPKDIIPIKSVNAVDISPLLREVIEYTKDQNAVGDLEALISKVPNKDSLDWKLISGVLCNAIIEWIAKDTDNRKDLIIHLQKEIGYLLQRMGLTM
Ga0207887_10268582F012880GAGMKFNIIAFIWSTALVLLTFQICLAWIDWDFTNTIVYKFVLIMNGFMFGMVITDWSNNA
Ga0207887_10268583F012032AGGMTKQEFKTTVGIGFFSCKWIKNNGQVAKIKRGILGQYAWRFTHDPIANRDNFQEHNDYVLAFRVGSGLLPEHSRWANINTNTVFDINRVAV

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