NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1012738

Scaffold Ga0207887_1012738


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1012738 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1307
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004908Metagenome / Metatranscriptome419Y
F011291Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10127382F011291N/AMQMETMDKYEINVWKDAELLSKEVVEFETRELCYEYMMQKYHSPGSWTGSHQNIKGVTLNRPPIGIRVTWSKLPGRIYKPAKLNAEEKKLQRELYNSITLEEIPELGRNEMLAKVRKDYGPNPDATGYNEFPSRKSKVYINGITGEKYTKDA
Ga0207887_10127384F004908N/ADLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSKLLELLSMGFRKTVENFKAGKATTMQGGEARFWVVVFQDYEVRLQTKAQIMEIVTEGHRHREDDDNAKFERNGHKEEQYTLE

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