Scaffold Ga0207887_1012738

Overview

Basic Information

• Taxon OID: 3300025069
• Scaffold ID: Ga0207887_1012738
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1307
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F011291	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10127382	F011291	N/A	MQMETMDKYEINVWKDAELLSKEVVEFETRELCYEYMMQKYHSPGSWTGSHQNIKGVTLNRPPIGIRVTWSKLPGRIYKPAKLNAEEKKLQRELYNSITLEEIPELGRNEMLAKVRKDYGPNPDATGYNEFPSRKSKVYINGITGEKYTKDA
Ga0207887_10127384	F004908	N/A	DLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSKLLELLSMGFRKTVENFKAGKATTMQGGEARFWVVVFQDYEVRLQTKAQIMEIVTEGHRHREDDDNAKFERNGHKEEQYTLE