Scaffold Ga0207887_1005986

Overview

Basic Information

• Taxon OID: 3300025069
• Scaffold ID: Ga0207887_1005986
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1855
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F055665	Metagenome	138	Y
F077174	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10059861	F077174	AGG	MVRNRRGLAPWSLAREAGIESATVDGTIEVPQYVQPVLDTGFVDEKGDWKGA
Ga0207887_10059863	F001227	AGGAG	MVARRKPRRARRRKSFSINLLETGAGLAFLDAADAGQAAQSFIKGDINGGLRVLSNAFKTNKNDFIKIGVGTLAAKLVLGSMGGNKVLGSVGPLKLRV
Ga0207887_10059867	F055665	N/A	FGSLGAASKKLDQATGQATIKAVTKDNPILGFVAEYLMKRGGLGDLVGQQSQNTPSNEPQKDQKLGLK