Scaffold Ga0207887_1004114

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207887_1004114

Scaffold Ga0207887_1004114

Overview

Basic Information
Taxon OID	3300025069 Open in IMG/M
Scaffold ID	Ga0207887_1004114 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2240
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.9853	Long. (^o)	-145.0838	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015739	Metagenome / Metatranscriptome	252	Y
F089026	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10041143	F015739	GAGG	MIRPELHTFKWSPKTKSKEDLELVKVLEQLVKDQNISKTQLTRKALSDFVKYNQKADK
Ga0207887_10041147	F089026	GAG	MEQVIMTIKRSYKDRSITEFNEYSDKSIRHFIQVLKQWRDLEK

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