Scaffold Ga0207887_1003297

Overview

Basic Information

• Taxon OID: 3300025069
• Scaffold ID: Ga0207887_1003297
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2503
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012984	Metagenome / Metatranscriptome	275	Y
F089026	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10032974	F089026	GGAG	MTRIKTAYKNHFITEFIEKYSDDSNRHFIQVLKQWRDLEK
Ga0207887_10032978	F012984	GAG	MEVSIFEPLSELQKQQYLTELGLEPVLSYYNNEIKKHSRVCFKSLELREKRDRCFKLMREEYQELC