NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1031110

Scaffold Ga0208012_1031110


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1031110 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)825
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F033078Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_10311103F000423GAGGMMTKSPSKAIFYIKYYADKHQCVIERKATLDENCFEGKHKKFGYPYKKYIDIWATEEVNNGKPQYRTASKSWEINDVKTI
Ga0208012_10311104F033078GGAMSKPFKEIKVLPAYLQPKIISAVAFVHECSPNLEKAVERINTLQKHLSEKEIMWVMSLLTFEKLLDLV

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