NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1029727

Scaffold Ga0208012_1029727


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1029727 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001039Metagenome / Metatranscriptome795Y
F015325Metagenome / Metatranscriptome255Y
F024328Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_10297272F024328AGGMTITEMEKQILLAIKIESQLPLASEQGYKDLAKFVRKLFKEYRND
Ga0208012_10297273F001039N/AMIDYNLVLYFGIGLIVFGFVLFLIAIHFERQAEIKLFKLEQLDKAFRKAKENDNN
Ga0208012_10297274F015325N/AMTDKKIWLVIEKNNYGGTTHSYNISKVADTIEQATTFKVHLDALKESENKTYFLASDISTIIDKVVYHHNKAVDEKPLILKDEVKDTSSEMPF

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