NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1021396

Scaffold Ga0208012_1021396


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1021396 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1045
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F065107Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_10213961F001066N/AKNIVVEDKRKTVSPFNSAKHFKEANIPALCNQCIYRSVEDGGNGKCPKYEADAVCAIREDFLKFINELDTRNPEDLKAMIDMIAKISFENVLMALTQAKMDGNIPDRNTKSEIKTLLDIVKSINDLNSKIVVTEKQEYTKEGDIANIFRQIKAQKSGGG
Ga0208012_10213964F065107AGGAMPRPTKEQMAERQQFIQVVADCADNPSKFSEVFLDHKLFDYNKKYVDCQD

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