Scaffold Ga0208012_1021013

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1021013
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1056
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029601	Metagenome	188	Y
F062171	Metagenome	131	Y
F093714	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10210131	F029601	N/A	YAVSMMKVGDLVRFSAPSDKFHGKKGIIVRFVESGIYKQGFHYEVQTFCGHTIIALSFEIVKLENEYYIPA
Ga0208012_10210134	F093714	GGAG	MKIGDLVMKPLGSTTRDDAGLGLVIEIVYKPGLFPTRSGYKVQWSNDYGTFWASEDKLEIINENR
Ga0208012_10210135	F062171	GGAG	MKIGDLVSYGTLPHWKLEGCLGILVRKLQWNDQWIDGINWDGAPAWWIQYVGDEAPTWNYEEE