Scaffold Ga0208012_1010502

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1010502
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1654
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034595	Metagenome / Metatranscriptome	174	Y
F038267	Metagenome	166	Y
F046314	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10105021	F034595	N/A	LYLTGDEMKIDDRLKNMSKEQLISLIKEIKITCESNRGGTLNFILRLIKGEL
Ga0208012_10105022	F038267	AGGGGG	MSVRGFINIDIDTWNRKKRASVCYAGRCGSMQSTIKWARRYVKKDTDFALEVLNLAMKEEEKVRNVIKRFNRRFG
Ga0208012_10105024	F046314	GGA	MAIETRKEKMDHMFALIEEKSILEKRVKEHSDVEVAIRMLTYRIEEIKKELTLNKYELEKEAGIESMFNMDRGDPFKEGTD