Scaffold Ga0208012_1010360

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1010360
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1671
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10103602	F015346	N/A	MNPEYRSYKIGELVRAHATKALGVVTRSNYWALDEYLGGETEFIDVLFGTYQSTQHPVKYVEKVK
Ga0208012_10103605	F006383	GGAG	MYDKMWAVQQPGTILRARHSAKYGQLALVLARAYAGPKPSNGYPPRQYVKMQWLGTGERFEEMLTNAHNCFDIVSSCDTLGPEEN
Ga0208012_10103606	F022555	AGGAG	MAIAPKFKPGQLVRYSQGLHDLVGLVKSTQFARRRGEPVFVLVQWCGKYRQSEEYIPQTDLRLVSAV