Scaffold Ga0208012_1009914

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1009914
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1720
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F010572	Metagenome	302	N
F056142	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10099141	F056142	N/A	EAIISCDELLHSVVENLTPNDLFRWETPVSVSKMVPVKNIENTVNAVLSKHSLESLVDEEGFVQAAYIEFHDDKLDFKPNFRRISIYTYHPKWIPMAEGSEPIGYEVAYQLSREFKRDIYEKMDSQKNAYVDVVRP
Ga0208012_10099142	F004336	GAG	MKFIRNMLFATGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLLGIGLAFGGVGLYIGYYYEEVVLEYGMAIWGVAWLYNGFLMFVLAISIILSALKALVVKAFVSPEVQVGQAATRTAQMMRKGGL
Ga0208012_10099143	F006818	AGGGGG	MAGPPQMQTFTRKPQPQQAEEPPRDIAPAPNVLTRAPVSQAMMPSAEAMSDDELDLYVTRLKMRHKRLSQKWWGLRRKHGKDECPYCGMATGGGFCKIHQRDYDEYLGALSTKQNRSFGL
Ga0208012_10099144	F010572	GGAG	MTGYANSPAGYMNPVAVDKIQHPDYDAKAAENTTMRLVQYLYPVIKNSVEMLEVLCKETDVQVPTDLADNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWAT