Scaffold Ga0208012_1003267

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1003267
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3614
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F011090	Metagenome	295	Y
F020370	Metagenome	224	Y
F023120	Metagenome	211	Y
F026706	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10032671	F001039	GGAG	MIDYNLVLYIGIGLIVFGFVLFLVAIHFERQAEIKLFKLEQAYRKAKENERL
Ga0208012_100326710	F023120	AGG	MPYFREEDKKRKDNSWSDEAHAVLVLAIQTIDKLGGRQEFPDLRQRLDLILNSEHWKEKRSKEERERLNWYATTGGYEDENS
Ga0208012_10032675	F026706	AGGAG	MSNINTKLTRAQMKALAIVLSAGYASGKDSDDDVRDIFIKEYGNKGLALGFAYSEALKKLGIDTFWDENQDYIKLHKEGA
Ga0208012_10032677	F020370	AGGAG	MYTLAQILAAWTAAYGEDMNEEYPGFIQRLSEEKNEKD
Ga0208012_10032678	F011090	N/A	MKRIKHNNLLPWFTQDHGTLPASYLASCEKFFRALGKKRNKFQASSSNATRHNLFTEIEAASRKRQAASSGSRRDPDFLKRNKI