Scaffold Ga0208012_1001727

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1001727
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5638
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004103	Metagenome	453	Y
F004165	Metagenome	450	Y
F017044	Metagenome	243	Y
F018618	Metagenome	234	Y
F087890	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100172710	F087890	N/A	MKKFLKDKSGPIMMGIGAILLVSDLMGVEGIITFAVGIILIVEGVDRM
Ga0208012_100172713	F017044	N/A	MQTMKHLKNDYIQLGNLIYKPYTICNLPPNFGATDEDGYSLITEWFNYKGYTYLFDSVAKTK
Ga0208012_100172715	F004165	N/A	MKLTSKHKRKIKREVDLDLGVKAPRSIVFKSKKIYSRKIKHKKNG
Ga0208012_10017276	F004103	N/A	MKLIDQVKPEILTALENEAKINYSSSYRSIIASLSNTERYRQLSIDQVDQLITFLPNELHPNGRVDFYYGDYLLQKEYQL
Ga0208012_10017277	F018618	N/A	MNELDLQTKIEGLKKAIAEHNDFAGNYESDLAKCEQELKDYNKPELTSSQLDDIQEAIERGVDEFDFSDTQNFDIEYGIEYDGKVHCESHDLNETHELIEKITEQVHKLFKEVLDTTEDDNHPVEKLQN