Scaffold Ga0208012_1001720

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1001720
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5649
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F004879	Metagenome / Metatranscriptome	420	Y
F049689	Metagenome	146	Y
F050675	Metagenome	145	N
F095606	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100172012	F050675	N/A	MVNTKLVKDIETIGDALWLNYKGYDIRIEKTKQFNNNNLVITVTPKGKEDYTDRLEVEE
Ga0208012_100172013	F095606	AGGAG	MKRLKEEINKNGFEYEREEKALEAIDAIFSLVGSRDFAGLHRLTKTKLGSAMLDIAECYGEFTEGSMADWHWSTNRDGEIIRYARKFNPNEPIVPKDF
Ga0208012_10017202	F002330	N/A	MIICDIMLKYIKQINEALKIGDKFTIYYAPTFTKDGQEQTTIYEPHQYEVNVRSAIWDEKCKINKTGSLTYFDVEKNSHRTAIQTLQPVRIYINKTMYVWKEGK
Ga0208012_10017203	F049689	N/A	MFGRKENNMDKDQYFVIRVWYFDYKDTDKYQYSIVSDRAYPMSKAIDIKMAQDIMETNPNISFQIQKVNLMDIGKSKIAS
Ga0208012_10017205	F004879	N/A	MEKTNMAKANELKLYQREHFSTKIEKKLEPEIEREELKIKTTINKILDKGIKSFSKSIGADKVIARLEKAEDEKREASRLAYTFFNNKASSIVSYSKAKEYKFDRDEKNTISVKDCISQLEKWAEKQAEQYAETTEQGKRLAYLRALQTKAKDMVAEASVSDELKSSLDNLFQFVGVSWEQKLPALPKPKK