Scaffold Ga0208012_1001233

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1001233
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7170
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028316	Metagenome / Metatranscriptome	192	Y
F035326	Metagenome / Metatranscriptome	172	Y
F077803	Metagenome / Metatranscriptome	117	N
F105495	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100123312	F105495	AGG	MHLPRVPRAIVGPSGDTVRPVMKNITIDGEVRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0208012_100123313	F077803	N/A	MISEVIPQDYIIEKFFQYAGYPKYKKITNVYEGGCPLCREGKSWGKKRRLYFVAKENYIFCHNCGWSGSPINWVQEVTGKNYIEIITECKEFNTFTIPEEKVNPLIPEKQPESLPGDCINLYDNLQYSFYSHEEMVTHAINTCNSRRLFTAINKPKSLWFCRD
Ga0208012_10012337	F035326	N/A	MKNKVTTCGYFIKRLRDNGYTVNRIFNEYATHDCRKWTIMIEPRAASLYITCYVNKDWNEDQMFELNDGVRFKNIQLKTDSMEVILTKLIDKDILPSEKNT
Ga0208012_10012338	F028316	N/A	VKKTPKNKNFDNLLKTSITAAEDISNGNEQGLSVMNDYLAEYLKSFVLLGYDTKGESVVILSGKTAQDYDSLETLLRRVGNIDFFNNIQEEKDKDV