Scaffold Ga0208012_1001191

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1001191
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7376
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019253	Metagenome / Metatranscriptome	231	Y
F031843	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10011912	F019253	N/A	MTQHTDKVPLLSVQSTDDKRYHVLRDFLNSVFDDVEDNAWSVSSNLGKFVDALSTMESKDIDTLTRTVKKYEVKGTSSGVYGERTYGYDRSRIDRTLIRRKRAN
Ga0208012_10011919	F031843	AGG	MEPTQIIRRSNMKQRKVRIPYTNYGLPPSAEQGGKFVDFNEVIKERKPIKKIRIKRK