Scaffold Ga0208012_1001136

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1001136
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7567
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017402	Metagenome / Metatranscriptome	241	Y
F035962	Metagenome / Metatranscriptome	171	Y
F051054	Metagenome / Metatranscriptome	144	N
F084709	Metagenome / Metatranscriptome	112	Y
F087741	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100113610	F051054	GGA	MKTIKLTTFNDLGDCDRQDVNDLISALVRMGYEVWMDDNFVCFNLGNEDVIKDENERTT
Ga0208012_100113614	F084709	GGTGG	MVETDNSVPNKFRVLKMAMDNWARKNHLLSIDSPKGRKYGDDVDRYNKLKELFEFHKPNFIKPFHMVELNKMFKMYNNG
Ga0208012_10011362	F035962	AGGAG	MDKLGLYINNLMTTIVSKDEKFFLRKLAFDELCKLKMDTSDFLARYVDEFDGIPDELKEKDTKQLILEFGEQNENNK
Ga0208012_10011363	F087741	GGAG	MKITSDVLTELQKIRSAIDDAYEKLNVILYDRVTAVKTTYKPSNPSEKVTENFSYISEKIRLIQESEVIGEE
Ga0208012_10011364	F017402	AGG	MANDHAKDRYDPPGVGSDFDEHIYGDVVRGEVFRLKPLSADKVYRKVDEYNCHDIIENQTKQFDAKLKVYVKS