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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025066 Open in IMG/M |
| Scaffold ID | Ga0208012_1000652 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11064 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium Gr01-1014_44 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016597 | Metagenome / Metatranscriptome | 246 | N |
| F023963 | Metagenome / Metatranscriptome | 208 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208012_10006522 | F016597 | GGAG | MPLDRDSIPHEWAGQNNHGSYPFASSTGDSSYGLFFTPREMELFNDYNTELLGIIAQTGVNYYRIEPDSSDPNSIYGESEVKVTRDPVQVMSWVMMDEPETETNSFTVDVRRRIELYMHKDRLTELDLVPRMGDFVEYDNQYFEIQRCGVPNFVFSYPQTKLGVIARCMSVREGVFDPDRDFVNKEYVGDSENPY |
| Ga0208012_10006523 | F023963 | GGAG | MATPSNVHQKSIEFDEVNLFSIDKAVYDWFNTKHATNIKGRRVPVVFGGWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNTDRFVFQQADGAPRIKISERVAMSNFDANRRVPFDGPHMYSSSRRTSDAPVMEVATVPYPDFVNIPYTITFWASYVRHANYFNDKIWQNAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVDGYLLKKNDVNVTRTASKMIMSEGYVEQPAMPTPGHKSIDEILTHERAKAPHQYPEPMPPGLGKVNYGSLNNSDFGLEQYNQPQQARVGGGKIDYKNPGARSLDSY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |