Scaffold Ga0208012_1000649

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1000649
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11107
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015400	Metagenome	255	Y
F020606	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100064914	F015400	GGA	MKWLWHKLQSFYWKLILGIIVLGSVFVYFYRLLRPAVDKSLFLEALKTDAESALKENELRGRLEKDKIGAIKNVYEGRLRDTKKIDDRNERLKALIRLYEELDI
Ga0208012_100064916	F020606	N/A	MKKVVALILCFSLNAVAAEVTKFDPRPAAVEQDGDSYIGILLSEEDFRKLLQNKLDSLAKLGECSVDKKVCTQMQETYKLSIIKLEDTILKDNKWFNRNRGTFGLLTGLVVGAGMSIAIVKAVYQP