NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1000631

Scaffold Ga0208012_1000631


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1000631 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11390
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (46.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042023Metagenome / Metatranscriptome159Y
F043614Metagenome / Metatranscriptome156Y
F045140Metagenome / Metatranscriptome153Y
F080506Metagenome / Metatranscriptome115N
F087296Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_100063118F080506N/AMKLEEAVRIGKGVDLTTIEECVNNIHSFSPQIFPYTKINEELTELYEEYDNYKKNPETWMEALCGMKA
Ga0208012_100063120F087296AGGMIQVNCYTLLTTKIDNLQKMITLTKASRVAQEVNEEEANVEYSEWVLKWQLIESDMMFNVPWKKLYERVGLTKTMSGPSTCRWTIAEKKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNSRTDKTRRF
Ga0208012_100063123F045140GAGMIRLLTIFLLSASIAQAVSLEIKLAYQKVTEKGRPYGSPGGIYFEIKDIDPFLPYWVQYSHDFKKWEDLYNFGSFGTNSTSPLFHWNELPPGKCFFRIVQKY
Ga0208012_100063125F043614N/AMKNITLTFERKGSSLMSDSEDYYAHYVQESTKSKWQILWQYSQSGEHIGSIRKLVEDKWEYQGEVFRFKKLEQGLKVELDLLESDETYESVSRAMSTPPPVLA
Ga0208012_100063129F042023GAGMNNMSSEKRVYICFLIVIIFFCSGCSTTRWEWMPNRDGLDPDVNKVALPDREELGGIEVDVLKISF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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