Scaffold Ga0208012_1000334

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1000334
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17381
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F022108	Metagenome	216	Y
F031893	Metagenome	181	Y
F076605	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10003341	F015360	N/A	MDYLWAPKDEKLVSSLLDSLGFTGVGESSRYPAGVKYDALVAICDVISSNEKTASMVASRTHELQAQRRVKSVRAPSVDSVVSALASGKMSEADLKKAMKKAGLLK
Ga0208012_100033410	F076605	GGAG	MNNLEKFFVYRLAKVNDKSNYHFVDVDMDSEVTKEAVYYGITSDPKMRLSKHRPKKGQDIALIVMAEFENVFEGLAYEANLVWDHVKKYGVEPEYQGMAGIGNKGYKYGGKK
Ga0208012_10003342	F006773	N/A	MSQATQTKTNLPWKNGSKTVDYFVEIGTTPYGKYGLYKEMIPVGTGSRGRHLELAREIRMSNPEIFDEFELRQIVSRG
Ga0208012_10003348	F031893	GGAGG	MKFEIEISKDDFNLMLKNRYGHDDVLTRGYMLDILHDIVDQIHDKERGY
Ga0208012_10003349	F022108	N/A	MIRAETSQSMSKDQYRHEANAFWELKAVVKAWSETINFNGDELNGHEMRNYGLEVIHGLKKITKKIDDAIAEGKEMKKDGFVYENFELKQKGGE