Scaffold Ga0208012_1000308

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1000308
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18328
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004699	Metagenome / Metatranscriptome	427	Y
F017324	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100030820	F004699	AGAAGG	MNGAIYALRLKLSDFINDPLEHLVVDKINEVNDIHTFKLQLWYDEGEVKASDLKSFMKKYESLLHYKTTIRPNRVADYAQFTWYNIIHKDDKDLKYPCRFQYEHESGWKLGGTMNGLEQFKSCLEFVTSPKPSRQDGHRERPKRKQKRNDYED
Ga0208012_100030828	F017324	N/A	MGHIQTHRSKITKRTDIDVGQALRGRVYEIRYESDTATKGKYVVLGINIYPKGGGKSKQLLHCLDLDEISLTEVRNLVREASGIETGWKKGLEHQQLIIEGRSTALYDNQLKKLSKKFPGIYKTFKLDKVKRCELTNYDFISITDIRTKKKFGIVDED