Scaffold Ga0208012_1000200

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1000200
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23693
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (76.60%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F006865	Metagenome / Metatranscriptome	363	Y
F007944	Metagenome / Metatranscriptome	342	Y
F009609	Metagenome	315	Y
F010325	Metagenome / Metatranscriptome	305	Y
F012582	Metagenome / Metatranscriptome	279	Y
F013774	Metagenome / Metatranscriptome	268	Y
F013775	Metagenome	268	Y
F037421	Metagenome / Metatranscriptome	168	Y
F041256	Metagenome / Metatranscriptome	160	Y
F081450	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100020013	F013775	GGAG	MEKTYKTIKEFAKDYRTEITPMMKSKGFGISISTSKGSYWNDGRLNFQIKKIPSNFYVWTNEYSKYNKTEKSQKLLNVIRDRVNNILVESNLDVDLNFDYHRDVRYKPLPEGWDIDEV
Ga0208012_100020015	F041256	GAG	MNLNEYLIENDRHIGDVVILFSVGAAVDKVSGDTFPLMADNTIGFDEPFNLMDMDISYDSEEWYNTLNNGDKKVVDEVMDNLSYENYVDSMVGEPEYLGER
Ga0208012_100020020	F010325	AGGA	MLRKQLVSDKIDQLQLAVERLKSSLVVPTEPGDVGTPIQVVIDQLQQIENQIDQIVNLIELESD
Ga0208012_100020022	F013774	AGG	VNDKLLELKRKKLQQQILYLRTELEETQWIFQDCLKEFDVEFRKYFKDPTEKKKKDVINEPTEFDIPATDVNMVFKKIAQKTHPDKLINKDLSDEDYNAKVDMYKEAQRSVENNDWSKVVEIAKELGIDISGIKNDDSEYLEESVKRLTEKIKQLKLTYAWKWGNTPDQEREIVKGMILQSLGLDKIKEK
Ga0208012_100020023	F037421	AGGAG	MSDKPEHSDYFRELIRKLKELRISADNGEIIVPNDDEDVLAFDELDLPFSPDAFDRMNSEEKEALFIWLNKDNMPQA
Ga0208012_100020024	F006865	GAG	MGKINRIIKINDILYECLGTMSVESSEIKGTEYWKKQWGSDTVLRNGNDYYYCRVVIDAEFEDI
Ga0208012_10002003	F081450	GAG	MTNFESTSCKILGVILFLLIVIMGLQLMGCSRSVPPPPSDYIDEVDTSNFV
Ga0208012_100020030	F009609	N/A	MKLEGKKVKVIKTITSVNGALHEGEIILVERRENGHWRCRDNMGRIFYLEESNLKIIKK
Ga0208012_100020034	F007944	N/A	MKMSRWSDYEKYIVMLTSYNSKANGARLGYQAFLEFKRVKGALVAMSKNDSNYSYDDNIYSRVITSSRALQILEKIENCKWDDDIITVAKQIKAGDMLSPVK
Ga0208012_10002004	F012582	GGA	MTVSQKKLKHLSATMLHWAEENKIQTKRNGNYEIPQRNKWKSDFTFVTKLDFMLADGLDDKLKKKEMKMCNELYSYYSQCYMRK
Ga0208012_10002005	F003091	AGGAG	MTMLPQKPITKPGEGKQRQKHVSQERYLEERYQISAGLKGPKRLEGESFEDFRTRRKAENGLLKEYLRGVWIKNEE