Scaffold Ga0208012

Basic Information
Taxon OID	3300025066 Open in IMG/M
Scaffold ID	Ga0208012_1000080 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025066 Open in IMG/M

Scaffold ID

Ga0208012_1000080 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38949
Total Scaffold Genes	81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (90.12%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38949

Total Scaffold Genes

81 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (90.12%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	100
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

100

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F018814	Metagenome	233	Y
F026408	Metagenome / Metatranscriptome	198	Y
F048646	Metagenome	148	Y
F063091	Metagenome	130	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100008017	F048646	GGAGG	VLKVLEVFERQARVATERPDGSEYINFEHVYDTRECLLNTNYIVAIHPYEFSSSREIKKTEGRFPEGTKFSTFVLDGNSFRQSEIIVIGSFEKFTQVLGDTAQ
Ga0208012_100008027	F005620	AGGA	MLTDEEINKHIDIFKTFCKNNRLRLREAGDGMPIARAIGKFNEDQFFCNFRTGTIGVFVTRETQRQFTYLHKKLTKLGCVATQLGDFEAAYDLEWMNIPPVARLLKIKKGAAKVRDPKWLRD
Ga0208012_100008041	F018814	GGAGG	MDSTKSHVKIYNISPEEAEDFEFDYDTETSDILTELVPNLDDWGGLGWMELEEYEYNPHDNTMHLSLETKWASPVQWLQYASKGTHYFENRLITMSTVQKDETCVNGVAIMDGEVLQQKTLFEMESEEVGKYYNEGHPDYNLESLDNQIWDSIGKFVKVCEQFYLEGDKENDY
Ga0208012_100008056	F101067	GAG	MNPTLDLHGYKHHEVQNAVARFIEDWLGEGVFIDIITGHSEQMVKETVKVIQYYGLEYMTGLPEHSGKIRVVLYNDYH
Ga0208012_100008058	F063091	AGG	MLYNSLFLLLFSTFFNQTYQLRQIECPRWMPGSNEVLPQGVVLSPALELQNKVRCYCEVVKRKERQCIARHVPASICKERTSVWVADNLSLKNSFRLVNGVAPAPRRDRMMSFEP
Ga0208012_100008059	F026408	AGGA	LNRRGMTLLIVLVTSTLISLSVTLLISSVNTEVMIAGNNLRIAHAKISAASGLNHFAALNLTYDTLRERAGDVQTLQIIPETQLGQRTSYEVNVHFSPSLSDGRYFVESIGYYKKSGRVISVHPIKALFQGEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208012_1000080

Overview

Ecosystem & Geography

Associated Families

Sequences