Scaffold Ga0208012_1000045

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1000045
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53104
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (71.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002310	Metagenome / Metatranscriptome	572	Y
F041445	Metagenome / Metatranscriptome	160	N
F061276	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100004537	F061276	AGGA	MPRYITRKVTKFSFVMPVYDNDVYLTNIVPDTGPPSGEWRELMIPCEDRHSVGYNVYGWDYKKQVWHIIDTGGYYDEAKEIADEYDKKMVKELGIYCDDMGDKKSYDDI
Ga0208012_10000456	F002310	GGAG	MNELIVNADGTVTVVGDAGSVSGIIAEAVEAATIPAERDIDGNEVTPEIVPDADTLMVEISAEDLKTHEWRLPKAREERLEDIRGVRNSKLKELDLEYQLADEGVHPTGLDKTDVAAKKVALRDLPPAVETHLATLENTDDISAYVPDALE
Ga0208012_100004564	F041445	N/A	MAESRLRTTGQLLTGTGATTVYTCPSNFEAEVKLLYANNLHSSAVDLTIKAVLSSTDIPIVTTCSMAADEILDVLNSGPIAMQAADTIVVTAGTASKLNIVVTVSESFVG