Scaffold Ga0208012

Basic Information
Taxon OID	3300025066 Open in IMG/M
Scaffold ID	Ga0208012_1000009 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025066 Open in IMG/M

Scaffold ID

Ga0208012_1000009 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	109384
Total Scaffold Genes	172 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (32.56%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

109384

Total Scaffold Genes

172 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (32.56%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	100
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

100

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F007550	Metagenome / Metatranscriptome	349	Y
F025853	Metagenome / Metatranscriptome	200	Y
F043619	Metagenome	156	Y
F052941	Metagenome	142	N
F066699	Metagenome / Metatranscriptome	126	Y
F084710	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_1000009106	F066699	N/A	MKIKLPIYWDFKNQEESEVIANVPNESVKKVFMDFLMQKDYHERREWLVKNVPEINLNIPKELF
Ga0208012_1000009110	F043619	N/A	MTDYSEEEQYWKRENGEVIAVGDMNEHHAKNVLRKMLKKSRQRGLDALEMRDKMRLISGMLEDIRSELL
Ga0208012_1000009121	F006483	N/A	MGRYIHTNCTYEQNHTEGTYTFTGPCRGTGKPYSVTILGHELWDLNQGELLQVALKSLSADDREFVASGYSPEGWAKLWA
Ga0208012_1000009122	F025853	N/A	MKKFLINYTPAVHEGQENDSSKSFFYRVEMDEQFANRSENDNSAGMAAKDADSGLWKRFRWDRINSTVAI
Ga0208012_1000009131	F084710	N/A	LTFTDFSGKLYPVSERNTMNMNTNEIVHPIDNGQVTTDKVLVSCCGCGEELRISREEANEWTDTDWFQCHECE
Ga0208012_1000009132	F007550	N/A	MKKIILFLFLFSVSLNANPTLKIVPVQQKVLPNGNAYGLESGIYFELTNLEPFIMYKLQYSEDLRKWKDLVHLGTYKMSMTSPYWTWKELPPEKCFFRVVIAW
Ga0208012_1000009135	F052941	N/A	MKITLDFCGDCAILYPVMRDKMLYELSWKNEDTNRVSSKKFTGEEGKDHSAMDAALELAQEADGNMWPWVLERDGQEIASGWGGDLLGSYRYQG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208012_1000009

Overview

Ecosystem & Geography

Associated Families

Sequences