Scaffold Ga0208301_1026836

Overview

Basic Information

• Taxon OID: 3300025064
• Scaffold ID: Ga0208301_1026836
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 751
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011854	Metagenome	286	Y
F038717	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208301_10268361	F011854	GGAG	MGNATPTALRKTRAVLTGTSFADNTTGAITAQMVRQFTESGMGGFATIYSPAGTPASQAVASGATATIDWNADSVGANGPDDTGTVSSTTVGSDADFANDRIRIYDKGWFMVNLGVSFAQTGTDTVIWTFRIATQADGGSVTYPGYDAAVQKVAATLDNMASASGIIDTTG
Ga0208301_10268362	F038717	N/A	VPSVGDLVKGETSGAIGSVLNVSVEDITGDSAAGTFSTSDAEGYVYFTIVSGTLEDGETLFFLNENSAFGSAFNVEYK