Scaffold Ga0208300_131712

Overview

Basic Information

• Taxon OID: 3300025061
• Scaffold ID: Ga0208300_131712
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 563
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057768	Metagenome	136	Y
F104018	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208300_1317121	F104018	N/A	TGTSLGVSGAGNIVGDGVLKDVTDGELGKAFNTLSNNAINMIASDSGRKTLVTAGVVALGGAFARSRFPQLKLGGSKLYFRI
Ga0208300_1317122	F057768	AGGAG	MATTITRTFDATPTDKTYFSLTDNMSSSNLGNIQVPDGASRISRVDYAFACFNPKGWEVVCRLSGSNMSEQNFTLMGVDGDATADSGVTQADGSKDVAFS