Scaffold Ga0208300_106978

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208300_106978

Scaffold Ga0208300_106978

Overview

Basic Information
Taxon OID	3300025061 Open in IMG/M
Scaffold ID	Ga0208300_106978 Open in IMG/M
Source Dataset Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1973
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052647	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208300_1069782	F052647	AGG	LIEPYLPLIYLITGVTASYFSAKLILNHMTSIKKVKRSIDVQKDKKSFENGIEDLIENSPQMYSKVLQELQYLKENGADEKQMASLQRKADLLKTVVENQEIINVAGKPIIKYLGKLISGFGR

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