Scaffold Ga0208018_127882

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_127882
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 612
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012964	Metagenome	275	Y
F075993	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1278821	F012964	N/A	PPSQPPIQQSLEGQITMEQLAEMKARARDLAIQQTIAQQAAQAQQAPKVIYVRRNLTVAELLVVLLISCGIVTGIQWSWNFVSNALPRIEIKVR
Ga0208018_1278822	F075993	N/A	VANRRITEFPSINGVDIDEQDLLTLVHVFEIDPALRNKKITFTQFKNYLNLYYAPASGATPSGNVVISGDLTVSGLSTFSGIVVQNDAIVSGTV