Scaffold Ga0208018_106527

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_106527
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1814
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030436	Metagenome	185	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1065272	F030436	N/A	MNSSLERIKEIIKEYKNTDVFDGVKLNEQIKELTSRLYYIETLRTKAHQDFERVINSKVNEGFSVARATNEANKEVPEMYKLRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0208018_1065273	F056150	N/A	MDSKLIKKIENFILWIGREYNVVELEDFKQDIFVILLNKGQQFILDLEKDNAIKKYVYKLCLYQIISERSRYKTKYYIPSHFCSIEDIETYKSTSFKDSAIKELIESLDGLDRILLEQLLICSGNKKCLSEKSNIHQNTIQYKFKELANKIKENWSINEFYS
Ga0208018_1065276	F043411	N/A	MIDWTMKKFIDDTMKRRLTYNGKRVYIKALDTKKAIVSYTKEGNKGQFKVDINKLADFK