Scaffold Ga0208018

Basic Information
Taxon OID	3300025057 Open in IMG/M
Scaffold ID	Ga0208018_101136 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025057 Open in IMG/M

Scaffold ID

Ga0208018_101136 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5696
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5696

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F043888	Metagenome	155	Y
F067679	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1011361	F067679	GGAGG	VISPAQKQKAQSFLGQAYQDVLGGIGNLFPEKVKQGFQAGVDIMSPQARSELRDEKGNRVLSSIANYSTVSPGFKKELAKVKGITLREKPQEFLGAYAARLLTDVGTDSTRHIYWRYNHPMAIADAIIEKAAGPVYQELNPTQKAAVRLTIGAPAVSSLGVFDITNPGELFRPKGFAQSYAEQGSEDRRETGQPGLELVERIFLGRQGRPLKYETAKEDIPSLTPERYSRYMKNYYQDKGVTGLGLVKFTPENLQGEPEARIVGFPIGLQSIGAVAGGATALRGALKSQPPVITEMKGTQEIKRRVPGATRRAAGITLAGSLAGTLAGNLTNKAIASLNNNPERLPDTLEYQPGM
Ga0208018_1011365	F043888	AGGAGG	MGGGGTRVEYKSPQIPKDDSFEKYLQYQQQRESIAEQRAAQEKAEAAAKEEARKAAGQAGFAGLRSGVESQLRQGLISYTDATGQLRDYAARYDLTPPETDVAGLTELYTKELLPGRRATGVEAAYEELLGRSATEEEKSKALERFNQGYYSTVQDLKDSLVKGSEYQDKFNQSYLDNYYDTMFGKQTLTAEGKKSGQRTFNFDANLLPSYAEATKARAGVVTPDFKSQFTGTPAEIEEQLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSREVARITKEGDIYSQLVGAFNFS
Ga0208018_1011366	F001190	GGA	MTSTPVGQGTSDDYFDINKFEQLLERLEGSKGRQQRQKSLEGRRDIYAQGLASMMSNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208018_101136

Overview

Ecosystem & Geography

Associated Families

Sequences