Scaffold Ga0208018_100949

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100949
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6363
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004278	Metagenome	445	Y
F033011	Metagenome	178	Y
F053232	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1009492	F033011	N/A	MTSNLTRFYFEFDDDCRTGCFEGLSFLDVETIEADQYEQDLQNQDISYTRIDL
Ga0208018_1009493	F053232	AGAAG	MNKFWLGVQGYWSCISWLPAALLKFIWEEFPDLKFWKRHTNFDDHIWYAERVNGRIAMLALSFLLIWCLTHDIKLNEILF
Ga0208018_1009495	F004278	AGGA	MKTQFFSMLLSDIYKAIIKWWKKTWFEAKLKARLTMIEWENQWEAERELEEQNKPIYIEHEIDPELQTGESRKLGGAMELRAPWYNDPIQPERKDGVQEAPGMDDSL