Scaffold Ga0208018_100704

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100704
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7743
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010834	Metagenome / Metatranscriptome	298	Y
F019312	Metagenome / Metatranscriptome	230	N
F031655	Metagenome / Metatranscriptome	182	Y
F039095	Metagenome	164	N
F046627	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_10070412	F031655	N/A	MNFALDIAPLAGFLIGVNYWNSNFDEDYENPKYHSLQLCFGIFALVMTWATEE
Ga0208018_10070414	F039095	N/A	MENTTPDEYRWVRGGSKSLALLWLRQKNHDLMNIAQALKPQDTSNGYEMDIFIDLISIYGAMTTAIEMVEDVQQMVWEAEAKNADLKLTIQHLAKKVKTYEDRFDNLNEHLK
Ga0208018_10070417	F010834	N/A	MTNTVELLLKLPKTISLNTLYAGKHWTYRKKIKDGYKKIVEVALADYDHYSAKSCTIYIRYNTRADVDNNVLVSKFVADTLVANGWIPDDSPKYYNKLTIAFDGAVEKNYCEVRVTLVDCVLTNAED
Ga0208018_1007045	F019312	N/A	MNHTEAILKAQIVFEQPLTDKETIDQLLHIDAQMYANTGVDTSKAEMESVKRASAFIYRLIKGIDYDKGQRLIQAMGLTR
Ga0208018_1007048	F046627	N/A	MSFVKGDIGESLWCTHLEKKGHYNITTAPKKKFYDWDVRSEHSNRHYTFEVKYDEKAYWWAAKRGTPENPNLYIEFKNTNKDEDSGIRASKALYYVYMLVRDDSVTAYLFERKGLLNHLEQVTYKVVGNSATGDDNALGWIPPLHQLVSQPFFINKIML