Scaffold Ga0208018_100532

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100532
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9719
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F006619	Metagenome / Metatranscriptome	368	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1005321	F006619	N/A	PWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHVSDGRFVLLYTNHGAQAPLTHWRTYKQNEVFTQHDAWDLFFNMCDAGYVPFPGIALPQLKSAIKKQ
Ga0208018_1005323	F043890	N/A	MQKTYSLAACNPNSINKLKIEFIEEEDGSATIHIEWDENDPDLQWWTDLGEEGQKSFMIKALTDATKHYGD
Ga0208018_1005327	F001018	N/A	MTTQITQAKLKDLNVIKLYEHYNALEKSLPLLTPESQELAKAELEACANLRSEKVDRIHYAMASHEDAIERIKKEADLITQAKRHHESQLRSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKDLTVEITSDPEFWHTEERRRYCIEETITTTKRVVLRSMSGDVLSDRTEPKTTTKVLPNLDAIRSAYQEGQQLPPGVKVLQEYSVRTKRIYGEPRMEMAPSEYPGQLLPEDSSAD
Ga0208018_1005328	F025982	N/A	MSCHEHALKDFDLQLEMNGLQMDMMMDGNQVCSYKIDEYDDLEEKKLKLLLGKRFHQNAANAYWYYLQREKAAK