Scaffold Ga0208018_100492

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100492
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10243
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F020341	Metagenome	224	Y
F042290	Metagenome / Metatranscriptome	158	Y
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1004921	F002985	N/A	MSYVIACWRWGTPHAITANSKTNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLSGKELQVCDESQFRK
Ga0208018_10049210	F087066	GGA	MNDLQKAFLRGACVTILGFAVTGLLASIFLTPDKPKDTSKFEVIAEYEECNVIRYTDPTTRWQYFLKCP
Ga0208018_10049221	F001807	GGAG	MTVLAIEEATFIDETHVRITAVVDEMRLLYRATRYEPDEWAPALCETTITLDPEEQIPLDEDGFCSYLDHLDPDWQVLDLSEYK
Ga0208018_1004923	F020341	GAG	MKGFNTTKQATRSSSYWVASYTKDNEDEPFAIHKKVLSYAPGQDKESLMTKYCHSLMKLNPHVWEVLVHQGPSKIPDHGDQIVIRLSREPFKGCGQLT
Ga0208018_1004927	F042290	N/A	MTLTYRGVKYDKQEQAAKDKAWWNLAHRPWLSLKYRNLCYFPYVTGGQIE