Scaffold Ga0208018_100243

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100243
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17386
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F019760	Metagenome / Metatranscriptome	228	Y
F024891	Metagenome / Metatranscriptome	204	Y
F053302	Metagenome / Metatranscriptome	141	Y
F055664	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1002431	F019760	N/A	MGEKGYGAIYGSTWWGSGDAFTNTIGWGSAMFYILDPAQFQNRALEDGATMEAFECVSKSLRRYPQADRGRQLMDAYDVRVVAAGGDTEARTCTINE
Ga0208018_10024311	F053302	N/A	MDLGFIIEQLQRTEATDQDMRIAKGEWKIITKWSEAKEQIRWQSRKK
Ga0208018_10024324	F055664	N/A	MSKSDQILINRKNLEMLFSILTQVHLRGQLSRDEQIFVGKFVDLPPAPTTPNRSQRRLNQKIINQIIREEQKKAKDKK
Ga0208018_10024326	F005010	GAG	MALKMIRKHKHIREVEKYLRMLELDQINLTIQASRFGWNDEIQNQLTNSALLIRKYQRRLRLIRM
Ga0208018_1002434	F024891	N/A	MIIVEENTTAQIKMYLRDFTTESFEMEIISEDQRKEVVDQAISGTYDDFRKTFSFSYDVSSLVAENFYVVKIWEVGKIKLLSQDKMYIIPSGSEVATYQPKLATTEKVMNNEFKIYGE