Scaffold Ga0208018_100164

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100164
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22366
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F002876	Metagenome / Metatranscriptome	524	Y
F004278	Metagenome	445	Y
F009805	Metagenome / Metatranscriptome	312	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_10016421	F009805	N/A	MDVHIAVGEWMNSLMSRMTDAADGDCFYLPTLMHLHAYTLLKEGFFQDRNFKVEIKEQEL
Ga0208018_10016423	F004278	N/A	MKRTLFKEIIDAIIRWWKRVWFEAKLKARLDMIELENRIESELEREKEQRPIYTEKSFDPKLQTGESQKLGGEMRLTAPWYDELESQRKDGKP
Ga0208018_1001644	F000973	GAGG	MKYGIRKGLEDIAFELKGIKTVLSSLWHSRYDDGETDLLNPEAFADEYISTEECARRLSVSDQTIRNWIAAGKKNKDKGWKEGVHYVNITPDSGKRVTIRIPWNSLVQSFSKNKNLELTDLLPHNKYKSTQEMLE
Ga0208018_1001649	F002876	N/A	MACKKSELISAINSFGAARATADGNLIGFSAQLIGQLIETLEFAPEEEVVEDTEVKEAVP