Scaffold Ga0208018_100068

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100068
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43489
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (59.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F004130	Metagenome / Metatranscriptome	451	Y
F004278	Metagenome	445	Y
F101071	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_10006820	F000973	N/A	MKYGLRKSLEDIAHELKGIKNILGSMWHSRYKDGETDATNPEAFADEYISTEECGRRLGVSDQTIRNWMAIGRKTPDKGWIEGIHYVNVSPDINRKAVIRIPWNRLIQSFAKNPEIDLRNLRDRYDLYQKKTECLE
Ga0208018_10006823	F101071	AGG	MAGKGIRGVAARNEGAELISSKDLVLAANELMGGIDLDVASSKVANEYVQATEFYTPMDDGLNAQQWYGSCYLFPPAGAYFWDQKHEKWKMTRASSLSLTSSHAVWFRRMYHAWLAREIKQGLYFSNCPDMIRYEPKIFKFPMCILKTPPHLFCNKNGEVEKKRTCTSFIVYFPPQDCSSDAVDTFQKIYEERGHLLL
Ga0208018_10006826	F004130	N/A	MHSAAGFLDSFVQDELKCRCLSEEDFGQPLANEENDVPLYDMYNRGLVACEQGLERNPLNLEGTRPGTTGLIPSMEEGLAMGASPKPKALVLELEEPDEEELMLSAKRRGLMR
Ga0208018_1000683	F004278	AGGA	MKIRFFLMQLNNILKDTLNAAIKWWKRIWFEAKLKARLDMIELENRIESEIEREEQHKPIYREYPIDSVLQPGESQKLGGAMELRAPWYNDEIQPQRQDGVQEASRMADRK