Scaffold Ga0207906_1019110

Overview

Basic Information

• Taxon OID: 3300025052
• Scaffold ID: Ga0207906_1019110
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 953
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012033	Metagenome	284	Y
F014627	Metagenome	261	Y
F015480	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207906_10191102	F014627	GAG	MSKVKGMLEEDMMRYPELYNSHADEEFWIQCRKEELLEREGKPTIKLIRKGKSCQKTKKK
Ga0207906_10191104	F012033	AGGAG	MERKLSYKKEYTHPGNIYFKYVGNMTEDGAMKLQERAGYHPAGYGFGNFACINNVARWNCSNSCD
Ga0207906_10191105	F015480	AGGAG	MNLPTLEDMHVSEHTENVYAQIIAEEDIGESYGTKAIIQERIHTPRQHIL