NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207906_1014537

Scaffold Ga0207906_1014537


Overview

Basic Information
Taxon OID3300025052 Open in IMG/M
Scaffold IDGa0207906_1014537 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1100
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046014Metagenome152N
F070566Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0207906_10145371F046014GAGGMIRKRVYLNKPQAEGLIQIFRRNQLLDLLVYVAIYTKNKSPHYKLCIDCPIDTHPRLSNKLQDVLHTLVDKHSKALKQLAWEEYDDAETPVETLGLTPDFKEYVE
Ga0207906_10145374F070566GGAMSPKIEFTEAYLNQATSIFEGVQVIESKKAGRPIKYYVFPSKEGVPIITLHDDEEDILKDRKLHKRVIGEIINKITEEL

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