Scaffold Ga0207906

Basic Information
Taxon OID	3300025052 Open in IMG/M
Scaffold ID	Ga0207906_1003327 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025052 Open in IMG/M

Scaffold ID

Ga0207906_1003327 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2506
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2506

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207906_10033271	F002100	AGGAG	LSQIPRDSFRPALIKPTFNVSDYGHDLIIPLNCLSGSTVTLVPSTSTFVQVLEDGRVPVDEVNQFITNSDEMAGVHAGNDTDYDTTFEYLPDMSFQAYKASFSIAIFMNVSAYTSGNFAISSVQLTMKVVGGGEGDQIIIDKIINPGMANMTSATSQIAILNIDTKTSAKIPDKPVTIQVKVNTSAGSGTYQCGLVPLFCYLAPAV
Ga0207906_10033272	F008596	GGAG	MSGSWDIATATSLGTGVAKTQINGGNNLTKPTQAVNLVEVVPYTVSSGVYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTFINIVVPILEAYECNTGLQEGATSQFIISGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTGATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSFAGYGEFSSNDFGNSLPLKVPMQPGACGLAGTTTPGMLQLASYHNTHMPMKTSCKISTSFTNDVAQTATSRFIMGVGYTKQG
Ga0207906_10033273	F003270	N/A	MARKRSRRRKAKKNGSKSIKSMLRQVVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGGSGGLVSTANVSPNVMVQNRAQTNRAFGVAQRNRNFVPVDSFDYSTGSAFR
Ga0207906_10033274	F008691	N/A	MPLGYDVKEEATEVKKNLFENRDSFVMLVVAGVVGGIITRAVIPKSITEGSIFNRFKSWFGYDQEEYEEEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207906_1003327

Overview

Ecosystem & Geography

Associated Families

Sequences