NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207892_1042749

Scaffold Ga0207892_1042749


Overview

Basic Information
Taxon OID3300025050 Open in IMG/M
Scaffold IDGa0207892_1042749 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5673Long. (o)-138.6705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021317Metagenome / Metatranscriptome219Y
F032307Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0207892_10427491F021317N/ADLIGNAPRMLNEVNKIIAEQKASGVQDDAMKGLYQKRQMLELVTNNQEVINILGKPLLKKVLGFVRAI
Ga0207892_10427492F032307N/AMVAPAIALMGAKAGLKASKQYSVSVLGYDFIGLSMRLFLFLGIGVLIQAYFTATIAGGNWLNTVAGFFNIKFPSTLPEWLTKLFSTGYKGIAFWQILQITAVLLVVF

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